PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G15940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 129aa    MW: 13066 Da    PI: 8.7814
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G15940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.67e-343692358
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                     +++Y+eClkNhAaslGghavDGCgEfmps+ ++ +++a+lkCaACgCHRnFHRr +e
  OBART08G15940.1 36 AAVYRECLKNHAASLGGHAVDGCGEFMPSPAADaADPASLKCAACGCHRNFHRRLPE 92
                     679***************************99999*******************765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-21789IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.9E-293890IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4183990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-313989IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEAVVGVKYR PVVFPNGGAA AAAAGKSKAT PASATAAVYR ECLKNHAASL GGHAVDGCGE  60
FMPSPAADAA DPASLKCAAC GCHRNFHRRL PEAPPSPPLL ALPPPPPPPP PPPQPPQPQQ  120
HLPRTAAIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648555.11e-81PREDICTED: zinc-finger homeodomain protein 10 isoform X1
RefseqXP_015648556.11e-81PREDICTED: zinc-finger homeodomain protein 10 isoform X2
SwissprotQ6Z5282e-83ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLA0A0D3H0N39e-85A0A0D3H0N3_9ORYZ; Uncharacterized protein
TrEMBLI1QIZ15e-83I1QIZ1_ORYGL; Uncharacterized protein
STRINGORGLA08G0139200.11e-82(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-21zinc finger homeodomain 1